Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	52275	52355	81	2 [1]	[1] 2	USA300HOU_RS00215	hypothetical protein

AAGATAATTACAAAAGAATTACACTGATAGAAGAATCTATTAAAAAGTATAGATACGTAAAAGATCAGATTAAAAGATTTAAAAATGGATTAGAAGAATCGTTATTAAATGCAACTTTATCTATTGAACAAAATATGTTGAAAGTTAAAATTGA  >  USA300TCH1516_ALE/52134‑52287                                                                                                                                             |              aaGATAATTACAAAAGAATTACACTGATAGAAGAATCTATTAAAAAGTATAGATACGTAAAAGATCAGATTAAAAGATTTAAAAATGGATTAGAAGAATCGTTATTAAATGCAACTTTATCTATTGAACAAAATATGTTGa               >  2:57626/1‑141 (MQ=255)              aaGAATTACACTGATAGAAGAATCTATTAAAAAGTATAGATACGTAAAAGATCAGATTAAAAGATTTAAAAATGGATTAGAAGAATCGTTATTAAATGCAACTTTATCTATTGAACAAAATATGTTGAAAGTTAAAATTGa  >  2:8594/1‑141 (MQ=255)                                                                                                                                             |              AAGATAATTACAAAAGAATTACACTGATAGAAGAATCTATTAAAAAGTATAGATACGTAAAAGATCAGATTAAAAGATTTAAAAATGGATTAGAAGAATCGTTATTAAATGCAACTTTATCTATTGAACAAAATATGTTGAAAGTTAAAATTGA  >  USA300TCH1516_ALE/52134‑52287

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑