Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2597218	2597332	115	2 [1]	[1] 2	nikA_2	Nickel‑binding periplasmic protein

TCTTTAACTTTAACATTGTCAATTAATGTCGAAATCTTTAACCAAGAATGCAATTTTTTGTTTTCTTGAACTGCGTCAATATTTTTCTTAACTGCGTCAGCATCAAATGGCGTACCATCATGGAATTTAACGTCATCTCTCAAATGGAACGTGTATGTCTTCCCATCTTCAGACACATC  >  USA300TCH1516_ALE/2597077‑2597255                                                                                                                                             |                                       tCTTTAACTTTAACATTGTCAATTAATGTCGAAATCTTTAACCAAGAATGCAATTTTTTGTTTTCTTGAACTGCGTCAATATTTTTCTTAACTGCGTCAGCATCAAATGGCGTACCATCATGGAATTTAACGTCAtctctc                                        <  2:53392/141‑1 (MQ=255)                                       tAACCAAGAATGCAATTTTTTGTTTTCTTGAACTGCGTCAATATTTTTCTTAACTGCGTCAGCATCAAATGGCGTACCATCATGGAATTTAACGTCATCTCTCAAATGGAACGTGTATGTCTTCCCATCTTCAGACACATc  >  2:62516/1‑141 (MQ=255)                                                                                                                                             |                                       TCTTTAACTTTAACATTGTCAATTAATGTCGAAATCTTTAACCAAGAATGCAATTTTTTGTTTTCTTGAACTGCGTCAATATTTTTCTTAACTGCGTCAGCATCAAATGGCGTACCATCATGGAATTTAACGTCATCTCTCAAATGGAACGTGTATGTCTTCCCATCTTCAGACACATC  >  USA300TCH1516_ALE/2597077‑2597255

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑