Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2678019	2678074	56	2 [1]	[1] 2	cynR_2	HTH‑type transcriptional regulator CynR

TCTTTCAAAAATTCTATCCATTTCGTTGTGGCATGACTTAATTGTTTATCCTTCTTCCAAACAACACCTAATTCCCAATGTACATGAGCATCTTCAATGCGTAGCAGCTTCACATCTCCATTTAGTTGCTCTGAAATTGATGTTGGTAAAAT  >  USA300TCH1516_ALE/2677878‑2678029                                                                                                                                             |            tCTTTCAAAAATTCTATCCATTTCGTTGTGGCATGACTTAATTGTTTATCCTTCTTCCAAACAACACCTAATTCCCAATGTACATGAGCATCTTCAATGCGTAGCAGCTTCACATCTCCATTTAGTTGCTCTGAAATTGAt             >  1:31724/1‑141 (MQ=255)            ttCTATCCATTTCGTTGTGGCATGACTTAATTGTTTATCCTTCTTCCAAACAACACCTAATTCCCAATGTACATGAGCATCTTCAATGCGTAGCAGCTTCACATCTCCATTTAGTTGCTCTGAAATTGATGTTGGTAAAAt  <  2:58260/141‑1 (MQ=255)                                                                                                                                             |            TCTTTCAAAAATTCTATCCATTTCGTTGTGGCATGACTTAATTGTTTATCCTTCTTCCAAACAACACCTAATTCCCAATGTACATGAGCATCTTCAATGCGTAGCAGCTTCACATCTCCATTTAGTTGCTCTGAAATTGATGTTGGTAAAAT  >  USA300TCH1516_ALE/2677878‑2678029

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑