Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2799762	2799821	60	2 [1]	[1] 2	USA300HOU_RS14380	hypothetical protein

ACTTTTTATCATCAGTACGTGCAAGTTCTTCCAAAATAATATTTCGTTGACTTTTTATACGCTCTTTCGTCTTATTTACTTCGCTCATTAAGTCTGATTTTTGATTTTTAGGAAGTTGCGTATTTGCAATACGTTGATCTAAAGATTGTAAC  >  USA300TCH1516_ALE/2799621‑2799772                                                                                                                                             |            aCTTTTTATCATCAGTACGTGCAAGTTCTTCCAAAATAATATTTCGTTGACTTTTTATACGCTCTTTCGTCTTATTTACTTCGCTCATTAAGTCTGATTTTTGATTTTTAGGAAGTTGCGTATTTGCAATACGTTGATCTa             >  2:1217/1‑141 (MQ=255)            tcaGTACGTGCAAGTTCTTCCAAAATAATATTTCGTTGACTTTTTATACGCTCTTTCGTCTTATTTACTTCGCTCATTAAGTCTGATTTTTGATTTTTAGGAAGTTGCGTATTTGCAATACGTTGATCTAAAGATTGTAAc  >  2:56818/1‑141 (MQ=255)                                                                                                                                             |            ACTTTTTATCATCAGTACGTGCAAGTTCTTCCAAAATAATATTTCGTTGACTTTTTATACGCTCTTTCGTCTTATTTACTTCGCTCATTAAGTCTGATTTTTGATTTTTAGGAAGTTGCGTATTTGCAATACGTTGATCTAAAGATTGTAAC  >  USA300TCH1516_ALE/2799621‑2799772

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑