Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2800232	2800261	30	2 [1]	[1] 2	USA300HOU_RS14380	hypothetical protein

GCTTCATCATTTTTATCATCTTTTTCTCCATGTTTTGTTGTAGCCGTTTGTGACATATCATTTTTCATTGCATTAAGATCGTCCTCGCCACTTTGTTGACCCCTATCAACATTTGAAGAAACCTCATTTAAATCTTTAAGCAATTGATCTAA  >  USA300TCH1516_ALE/2800091‑2800242                                                                                                                                             |            gCTTCATCATTTTTATCATCTTTTTCTCCATGTTTTGTTGTAGCCGTTTGTGACATATCATTTTTCATTGCATTAAGATCGTCCTCGCCACTTTGTTGACCCCTATCAACATTTGAAGAAACCTCATTTAAATCTTTAAGc             <  1:31951/141‑1 (MQ=255)            tttATCATCTTTTTCTCCATGTTTTGTTGTAGCCGTTTGTGACATATCATTTTTCATTGCATTAAGATCGTCCTCGCCACTTTGTTGACCCCTATCAACATTTGAAGAAACCTCATTTAAATCTTTAAGCAATTGATCTaa  <  1:19321/141‑1 (MQ=255)                                                                                                                                             |            GCTTCATCATTTTTATCATCTTTTTCTCCATGTTTTGTTGTAGCCGTTTGTGACATATCATTTTTCATTGCATTAAGATCGTCCTCGCCACTTTGTTGACCCCTATCAACATTTGAAGAAACCTCATTTAAATCTTTAAGCAATTGATCTAA  >  USA300TCH1516_ALE/2800091‑2800242

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑