Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2837894	2837922	29	2 [1]	[1] 2	hisC_2	Histidinol‑phosphate aminotransferase

TCTGGCATGATCAGCATTAACTTTTGAATCAATTCATCAGATCCATTTCCTGCAATAATTTGTTCAGGCGATAATCCGTAAAACTTAGCATAAGCTTCCTTGAATTGTTCATATGCTGCATCAGGATATAAATTATATGGCGT  >  USA300TCH1516_ALE/2837753‑2837895                                                                                                                                             |   tCTGGCATGATCAGCATTAACTTTTGAATCAATTCATCAGATCCATTTCCTGCAATAATTTGTTCAGGCGATAATCCGTAAAACTTAGCATAAGCTTCCTTGAATTGTTCATATGCTGCATCAGGATATAAATTATATGGc    >  2:34960/1‑141 (MQ=255)   tGGCATGATCAGCATTAACTTTTGAATCAATTCATCAGATCCATTTCCTGCAATAATTTGTTCAGGCGATAATCCGTAAAACTTAGCATAAGCTTCCTTGAATTGTTCATATGCTGCATCAGGATATAAATTATATGGCGt  >  1:29635/1‑141 (MQ=255)                                                                                                                                             |   TCTGGCATGATCAGCATTAACTTTTGAATCAATTCATCAGATCCATTTCCTGCAATAATTTGTTCAGGCGATAATCCGTAAAACTTAGCATAAGCTTCCTTGAATTGTTCATATGCTGCATCAGGATATAAATTATATGGCGT  >  USA300TCH1516_ALE/2837753‑2837895

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑