Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2840951	2840988	38	2 [1]	[1] 2	[USA300HOU_RS14555]	[USA300HOU_RS14555]

TTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTT  >  USA300TCH1516_ALE/2840810‑2840953                                                                                                                                             |    tttCAGAAAATTCGGTGTATTGATTTTAAAATTTAATAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTaaa     <  2:6875/141‑1 (MQ=255)    cAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGtt  <  1:62208/141‑1 (MQ=255)                                                                                                                                             |    TTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTT  >  USA300TCH1516_ALE/2840810‑2840953

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑