Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	90877	90906	30	2 [1]	[1] 2	USA300TCH1516_00081	hypothetical protein

AAAAACAAAGAGCTTTTCACGATTAAAAGAGGAATTAATACATCTTTATCTCTTTATAGTCTAGAACAGAATATAATAGCAATTAACGCCTTAAAATATCCAGAATCATATAATTTTGAAGAATTAATAGAAGCTATTCCTGATAACTCGGAAA  >  USA300TCH1516_ALE/90738‑90891                                                                                                                                           |                aaaaaCAAAGAGCTTTTCACGATTAAAAGAGGAATTAATACATCTTTATCTCTTTATAGTCTAGAACAGAATATAATAGCAATTAAAGCCTTAAAATATCTAGAATCATATAATTTTGTACAATTAATAGAAGCTATTctt               >  1:64490/1‑139 (MQ=255)              ttttCACGATTAAAAGAGGAATTAATACATCTTTATCTCTTTATAGTCTAGAACAGAATATAATAGCAATTAACGCCTTAAAATATCCAGAATCATATAATTTTGAAGAATTAATAGAAGCTATTCCTGATAACTCGGaaa  >  2:39147/1‑141 (MQ=255)                                                                                                                                           |                AAAAACAAAGAGCTTTTCACGATTAAAAGAGGAATTAATACATCTTTATCTCTTTATAGTCTAGAACAGAATATAATAGCAATTAACGCCTTAAAATATCCAGAATCATATAATTTTGAAGAATTAATAGAAGCTATTCCTGATAACTCGGAAA  >  USA300TCH1516_ALE/90738‑90891

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑