Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	91199	91218	20	2 [1]	[1] 2	USA300TCH1516_00081/dus_1	hypothetical protein/putative tRNA‑dihydrouridine synthase

AGTAGAGTGGTCTCTCTATTTAAAAGATCAAAGAATTAATCCAATTATTTATATGGAAACGCCAACTGAAGATAGAAATTAAACTTTTATTTTAAATCACCCTAGTTCATACCTAAAAGACTTTCACACAAACAAAGGAGGAAACTTAAATT  >  USA300TCH1516_ALE/91058‑91209                                                                                                                                             |            agtagAGTGGTCTCTCTATTTAAAAGATCAAAGAATTAATCCAATTATTTATATGGAAACGCCAACTGAAGATAGAAATTAAACTTTTATTTTAAATCACCCTAGTTCATACCTAAAAGACTTTCACACAAACAAaggagg             >  1:1028/1‑141 (MQ=255)            ctctctATTTAAAAGATCAAAGAATTAATCCAATTATTTATATGGAAACGCCAACTGAAGATAGAAATTAAACTTTTATTTTAAATCACCCTAGTTCATACCTAAAAGACTTTCACACAAACAAAGGAGGAAACTTAAAtt  <  1:57882/141‑1 (MQ=255)                                                                                                                                             |            AGTAGAGTGGTCTCTCTATTTAAAAGATCAAAGAATTAATCCAATTATTTATATGGAAACGCCAACTGAAGATAGAAATTAAACTTTTATTTTAAATCACCCTAGTTCATACCTAAAAGACTTTCACACAAACAAAGGAGGAAACTTAAATT  >  USA300TCH1516_ALE/91058‑91209

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑