Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	155795	155849	55	2 [1]	[1] 2	USA300HOU_RS00705/treR_1	hypothetical protein/HTH‑type transcriptional regulator TreR

AACCAAAGTAACAAAAAAGTTTTACCAGCTGCTGGTGAAAGTATGACATCAAGTATTCTTACTGCAAGTATTGCCGCACTACTATTAGTATCTGGGTTATTCTTAGCATTTAGACGACGTTCAACAAATAAATAAACATAATACGATTAATAATAGAAA  >  USA300TCH1516_ALE/155654‑155812                                                                                                                                             |                   aaCCAAAGTAACAAAAAAGTTTTACCAGCTGCTGGTGAAAGTATGACATCAAGTATTCTTACTGCAAGTATTGCCGCACTACTATTAGTATCTGGGTTATTCTTAGCATTTAGACGACGTTCAACAAATAAATAAACataa                    >  2:54790/1‑141 (MQ=255)                   gTTTTACCAGCTGCTGGTGAAAGTATGACATCAAGTATTCTTACTGCAAGTATTGCCGCACTACTATTAGTATCTGGGTTATTCTTAGCATTTAGACGACGTTCAACAAATAAATAAACATAATACGATTAATAATAGaaa  <  2:63325/141‑1 (MQ=255)                                                                                                                                             |                   AACCAAAGTAACAAAAAAGTTTTACCAGCTGCTGGTGAAAGTATGACATCAAGTATTCTTACTGCAAGTATTGCCGCACTACTATTAGTATCTGGGTTATTCTTAGCATTTAGACGACGTTCAACAAATAAATAAACATAATACGATTAATAATAGAAA  >  USA300TCH1516_ALE/155654‑155812

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑