Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	394812	394866	55	2 [1]	[1] 2	USA300HOU_RS01805/ydaF	hypothetical protein/Putative ribosomal N‑acetyltransferase YdaF

GTCGTATTTTTAAATATAAATTTGGAATGAATAATAAAGTAGTGATTAAATTAAGTTGTGTGATAGGAAACTTGGACATCAATCAAAGTAATAGGCACTACAACGCTTATTGGCGGGGCCCCAACAAAGAAGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGGGATGGGCCCCAACATAGAG  >  USA300TCH1516_ALE/394671‑394859                                                                                                                                             |                                                 gTCGTATTTTTAAATATAAATTTGGAATGAATAATAAAGTAGTGATTAAATTAAGTTGTGTGATAGGAAACTTGGACATCAATCAAAGTAATAGGCACTACAACGCTTATTGGCGGGGCCCCAACAAAGAAGCTGACGaaa                                                  >  1:63147/1‑141 (MQ=255)                                                 aattaaGTTGTGTGATAGGAAACTTGGACATCAATCAAAGTAATAGGCACTACAACGCTTATTGGCGTGGCCCCAACAAAGAAAATGAAAAAAAGTCAGCTTACAATAATGTGCAAGTTGGGGATGGGCCCCAACATagag  <  2:59084/141‑1 (MQ=37)                                                                                                                                             |                                                 GTCGTATTTTTAAATATAAATTTGGAATGAATAATAAAGTAGTGATTAAATTAAGTTGTGTGATAGGAAACTTGGACATCAATCAAAGTAATAGGCACTACAACGCTTATTGGCGGGGCCCCAACAAAGAAGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGGGATGGGCCCCAACATAGAG  >  USA300TCH1516_ALE/394671‑394859

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑