Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ USA300TCH1516_ALE 544521 544652 132 2 [1] [1] 2 [divIC] [divIC]

AAAAGCGAAAGAAGCACAGTTTCAAAAGCAACAAAATGAAGAAATTGCGTTAAAAGAAAAGTTGAATAATCTGAATGACAAAGATTACATTGAAAAAATTGCGCGTGATGATTATTACTTAAGCAACAAAGGTGAAGTGATTTTTAGGTTGCCAGAAGACAAAGATTCGTCTAGCTCAAAATCTTCGAAAAAATAAATCCA  >  USA300TCH1516_ALE/544380‑544580
                                                                                                                                            |                                                            
aaaagcgaaaGAAGCACAGTTTCAAAAGCAACAAAATGAAGAAATTGCGTTAAAAGAAAAGTTGAATAATCTGAATGACAAAGATTACATTGAAAAAATTGCGCGTGATGATTATTACTTAAGCAACAAAGGTGAAGTGAt                                                              <  1:34219/141‑1 (MQ=255)
                                                            gTTGAATAATCTGAATGACAAAGATTACATTGAAAAAATTGCGCGTGATGATTATTACTTAAGCAACAAAGGTGAAGTGATTTTTAGGTTGCCAGAAGACAAAGATTCGTCTAGCTCAAAATCTTCGAAAAAATAAATCCa  >  1:60365/1‑141 (MQ=255)
                                                                                                                                            |                                                            
AAAAGCGAAAGAAGCACAGTTTCAAAAGCAACAAAATGAAGAAATTGCGTTAAAAGAAAAGTTGAATAATCTGAATGACAAAGATTACATTGAAAAAATTGCGCGTGATGATTATTACTTAAGCAACAAAGGTGAAGTGATTTTTAGGTTGCCAGAAGACAAAGATTCGTCTAGCTCAAAATCTTCGAAAAAATAAATCCA  >  USA300TCH1516_ALE/544380‑544580

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: