Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	550413	550481	69	2 [1]	[1] 2	hslO	33 kDa chaperonin

TGAAATGACACCAGTTTCTAAATTAATTGAACAAGGATTAACGCCAGAAGGATTACTAAACGAAATCTTAGGTGAAGACCATGTGCAAATTTTAGAGAAAATGCCTGTTCAATTTGAATGTAATTGTAGTCATGAGAAATTTTTA  >  USA300TCH1516_ALE/550272‑550416                                                                                                                                             |     tGAAATGACACCAGTTTCTAAATTAATTGAACAAGGATTAACGCCAGAAGGATTACTAAACGAAATCTTAGGTGAAGACCATGTGCAAATTTTAGAGAAAATGCCTGTTCAATTTGAATGTAATTGTAGTCATGAGAAAtt      <  2:3374/141‑1 (MQ=255)     aTGACACCAGTTTCTAAATTAATTGAACAAGGATTAACGCCAGAAGGATTACTAAACGAAATCTTAGGTGAAGACCATGTGCAAATTTTAGAGAAAATGCCTGTTCAATTTGAATGTAATTGTAGTCATGAGAAATTTTTa  <  1:54536/141‑1 (MQ=255)                                                                                                                                             |     TGAAATGACACCAGTTTCTAAATTAATTGAACAAGGATTAACGCCAGAAGGATTACTAAACGAAATCTTAGGTGAAGACCATGTGCAAATTTTAGAGAAAATGCCTGTTCAATTTGAATGTAATTGTAGTCATGAGAAATTTTTA  >  USA300TCH1516_ALE/550272‑550416

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑