Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	678202	678232	31	2 [1]	[0] 2	pip	Proline iminopeptidase

GTAAAGGGGATCCTATAATATTACTTCATGGATTGGATGGTAATTTAGCTGGATTTGAAGATTTGCAACATCAACTAGCATCATCATATAAAGTACTTACTTACGATTTAAGAGGTCATGGCAAGTCTTCTAAAAGTGAATCATACGATTTAAACGATCACGTTGAGGA  >  USA300TCH1516_ALE/678061‑678229                                                                                                                                             |                             gTAAAGGGGATCCTATAATATTACTTCATGGATTGGATGGTAATTTAGCTGGATTTGAAGATTTGCAACATCAACTAGCATCATCATATAAAGTACTTACTTACGATTTAAGAGGTCATGGCAAGTCTTCTAAAAGTGAAt                              <  2:58717/141‑1 (MQ=255)                             tggattggatGGTAATTTAGCTGGATTTGAAGATTTGCAACATCAACTAGCATCATCATATAAAGTACTTACTTACGATTTAAGAGGTCATGGCAAGTCTTCTAAAAGTGAATCATACGATTTAAACGATCACGTTGAGGa  >  2:47794/1‑141 (MQ=255)                                                                                                                                             |                             GTAAAGGGGATCCTATAATATTACTTCATGGATTGGATGGTAATTTAGCTGGATTTGAAGATTTGCAACATCAACTAGCATCATCATATAAAGTACTTACTTACGATTTAAGAGGTCATGGCAAGTCTTCTAAAAGTGAATCATACGATTTAAACGATCACGTTGAGGA  >  USA300TCH1516_ALE/678061‑678229

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑