Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	697028	697099	72	2 [1]	[0] 2	mrpA	Na(+)/H(+) antiporter subunit A

TTTCATGGGAGTAGGTATTTTAGATCATGAAGCAGGTTCAAGGGATATACGAATTTTAAGTGGAATGCGTCAACTATTTCCTAAAATGAATCTAGTCATGACGATAGCGGCTCTATCTATGGCTGGAGTACCATTTTTAAA  >  USA300TCH1516_ALE/697100‑697240 |                                                                                                                                             tttCATGGGAGTAGGTATTTTAGATCATGAAGCAGGTTCAAGGGATATACGAATTTTAAGTGGAATGCGTCAACTATTTCCTAAAATGAATCTAGTCATGACGATAGCGGCTCTATCTATGGCTGGAGTACCATTTTTaaa  <  2:10802/141‑1 (MQ=255) tttCATGGGAGTAGGTATTTTAGATCATGAAGCAGGTTCAAGGGATATACGAATTTTAAGTGGAATGCGTCAACTATTTCCTAAAACGAATCTAGTCATGACGATAGCGGCTCTATCTATGGCTGGAGGACCATTTTTaaa  >  2:33758/1‑141 (MQ=255) |                                                                                                                                             TTTCATGGGAGTAGGTATTTTAGATCATGAAGCAGGTTCAAGGGATATACGAATTTTAAGTGGAATGCGTCAACTATTTCCTAAAATGAATCTAGTCATGACGATAGCGGCTCTATCTATGGCTGGAGTACCATTTTTAAA  >  USA300TCH1516_ALE/697100‑697240

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑