Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	791680	791737	58	2 [1]	[1] 2	ltaS	Lipoteichoic acid synthase

ATTCATTTAGAAAGTTTCCAAACCTTCTTAATTAATAAAAAGGTTAATGGTAAAGAAGTAACACCGTTTTTAAACAAATTATCAAGTGGGAAAGAGCAATTCACATACTTCCCTAACTTTTTCCATCAAACAGGTCAAGGTAAAACATCTG  >  USA300TCH1516_ALE/791728‑791878           |                                                                                                                                             aTTCATTTAGAAAGTTTCCAAACCTTCTTAATTAATAAAAAGGTTAATGGTAAAGAAGTAACACCGTTTTTATACTTTTTATCAAGTGGGAAAGAGCAATTCACATACTTCCCTAACTTTTTCCATCAAACAGGTCAAGGt            >  2:4470/1‑141 (MQ=255)           aaaGTTTCCAAACCTGCTTAATTAATAAAAAGGTTAATGGTAAAGAAGTAACACCGTTTTTAAACAAATTATCAAGTGGGAAAGAGCAATTCACATACGTCCCTAACTTTTTCCATCAAACAGGTCAAGGTAAAGCATCTg  >  2:61853/1‑141 (MQ=255)           |                                                                                                                                             ATTCATTTAGAAAGTTTCCAAACCTTCTTAATTAATAAAAAGGTTAATGGTAAAGAAGTAACACCGTTTTTAAACAAATTATCAAGTGGGAAAGAGCAATTCACATACTTCCCTAACTTTTTCCATCAAACAGGTCAAGGTAAAACATCTG  >  USA300TCH1516_ALE/791728‑791878

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑