Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	864350	864468	119	2 [1]	[1] 2	secG	putative protein‑export membrane protein SecG

CTGTTGTACTACTCCAAGAAGGTAAAAGCAGTGGACTTTCAGGTGCCATCAGTGGTGGTGCTGAGCAGTTATTCGGTAAACAAAAACAACGTGGCGTCGATTTATTCTTAAATAGATTAACAATTATTTTATCAATATTATTTTTTGTACTTATGATTTGCATAAGTTATCTTGGTATGTAAGGTCCGGCGATGTAAATGTCGGGCTTTTTTATTTATAAT  >  USA300TCH1516_ALE/864388‑864608                                                                                  |                                                                                                                                            cTGTTGTACTACTCCAAGAAGGTAAAAGCAGTGGACTTTCAGGTGCCATCAGTGGTGGTGCTGAGCAGTTATTCGGTAAACAAAAACAACGTGGCGTCGATTTATTCTTAAATAGATTAACAATTATTTTATCAAtattat                                                                                  >  1:11350/1‑141 (MQ=255)                                                                                 aaaaaacaaCGTGGCGTCGATTTATTCTTAAATAGATTAACAATTATTTTATCAATATTATTTTTTGTACTTATGATTTGCATAAGTTATCTTGGTATGTAAGGTCCGGCGATGTAAATGTCGGGCTTTTTTATTTATAAt  <  2:27661/140‑1 (MQ=255)                                                                                  |                                                                                                                                            CTGTTGTACTACTCCAAGAAGGTAAAAGCAGTGGACTTTCAGGTGCCATCAGTGGTGGTGCTGAGCAGTTATTCGGTAAACAAAAACAACGTGGCGTCGATTTATTCTTAAATAGATTAACAATTATTTTATCAATATTATTTTTTGTACTTATGATTTGCATAAGTTATCTTGGTATGTAAGGTCCGGCGATGTAAATGTCGGGCTTTTTTATTTATAAT  >  USA300TCH1516_ALE/864388‑864608

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑