Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	919267	919306	40	2 [0]	[1] 2	[tlyC]–[USA300HOU_RS04555]	[tlyC],[USA300HOU_RS04555]

GAGCGAACAGCTATGTGGAATAAGAATCGACTTACTCAAATGTTAAGTATTGAATATCCAATTATACAAGCAGGTATGGCAGGAAGTACGACACCGAAATTAGTTGCATCAGTAAGTAACAGTGGTGGGTTAGGCACAATAGGCGCAGGTTACTTT  >  USA300TCH1516_ALE/919292‑919447                |                                                                                                                                             gAGCGAACAGCTATGTGGAATAAGAATCGACTTACTCAAATGTTAAGTATTGAATATCCAATTATACAAGCAGGTATGGCAGGAAGTACGACACCGAAATTAGTTGCATCAGTAAGTAACAGTGGTGGGTTAGGCACAATa                 >  2:46396/1‑141 (MQ=255)                tgGAATAAGAATCGACTTACTCAAATGTTAAGTATTGAATATCCAATTATACAAGCAGGTATGGCAGGAAGTACGACACCGAAATTAGTTGCATCAGTAAGTAACAGTGGTGGGTTAGGCACAATAGGCGCAGGTTACttt  <  1:46396/141‑1 (MQ=255)                |                                                                                                                                             GAGCGAACAGCTATGTGGAATAAGAATCGACTTACTCAAATGTTAAGTATTGAATATCCAATTATACAAGCAGGTATGGCAGGAAGTACGACACCGAAATTAGTTGCATCAGTAAGTAACAGTGGTGGGTTAGGCACAATAGGCGCAGGTTACTTT  >  USA300TCH1516_ALE/919292‑919447

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑