Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	947951	948007	57	2 [1]	[1] 2	mnhA1	Na(+)/H(+) antiporter subunit A1

ATATTAACGGTAATATCACCGCAATATGTAACAAACTCACTATGTTGTCCTCCTTTAAAAAATATTTATGTTATTCATTATACATGAATGATATAGTTCTGAAAAACGTACACACTCCTTGTTGTGCTTTATTTTCAGAAGTATTT  >  USA300TCH1516_ALE/948003‑948148      |                                                                                                                                             atatTAACGGTAATATCACCGCAATATGTAACAAACTCACTATGTTGTCCTCCTTTAAAAAATATTTATGTTATTCATTATACATGAATGATATAGTTCTGAAAAACGTACACACTCCTTGTTGTGCTTTATTTTCAGAAg       >  1:54406/1‑141 (MQ=255)      aaCGGTAATATCACCGCAATATGTAACAAACTCACTATGTTGTCCTCCTTTAAAAAATATTTATGTTATTCATTATACATGAATGATATAGTTCTGAAAAACGTACACACTCCTTGTTGTGCTTTATTTTCAGAAGTAttt  <  1:28718/141‑1 (MQ=255)      |                                                                                                                                             ATATTAACGGTAATATCACCGCAATATGTAACAAACTCACTATGTTGTCCTCCTTTAAAAAATATTTATGTTATTCATTATACATGAATGATATAGTTCTGAAAAACGTACACACTCCTTGTTGTGCTTTATTTTCAGAAGTATTT  >  USA300TCH1516_ALE/948003‑948148

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑