Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	979958	980021	64	2 [1]	[0] 2	ampR	HTH‑type transcriptional activator AmpR

GATGCCACTTTCATATTGTTCAATAAAACTTTGCGCAATTGGAAGAAATGTATGACCATCTTCAGTCAAGATAATTTGATTTTTATAAGTTTCAAATAGTTTCACATTGAGATGCTGTTCTAAATTTTTAATTTGCTTATG  >  USA300TCH1516_ALE/980022‑980162 |                                                                                                                                             gATGCCACTTTCATATTGTTCAATAAAACTTTGCGCAATTGGAAGAAATGTATGACCATCTTCAGTCAAGATAATTTGATTTTTATAAGTTTCAAATAGTTTCACATTGAGATGCTGTTCTAAATTTTTAATTTGCTTATg  <  1:61722/141‑1 (MQ=255) gATGCCACTTTCATATTGTTCAATAAAACTTTGCGCAATTGGAAGAAATGTATGACCATCTTCAGTCAAGATAATTTGATTTTTATAAGTTTCAAATAGTTTCACATTGAGATGCTGTTCTAAATTTTTAATTTGCTTATg  <  1:61725/141‑1 (MQ=255) |                                                                                                                                             GATGCCACTTTCATATTGTTCAATAAAACTTTGCGCAATTGGAAGAAATGTATGACCATCTTCAGTCAAGATAATTTGATTTTTATAAGTTTCAAATAGTTTCACATTGAGATGCTGTTCTAAATTTTTAATTTGCTTATG  >  USA300TCH1516_ALE/980022‑980162

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑