Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	987551	987644	94	2 [1]	[1] 3	USA300HOU_RS04885	hypothetical protein

TTCTTTTTCGAAGATGACATTTGATACTTTAATCTTCTAAAACCATAACTTGTCGCATCAAAAATGCCTTCTTGTACAAGTAAAATCAAAAATATGCTAATAAAAATAATTAATGAAACATAAAACAATATATTTAAATATGTAATGATAGTATGGCTA  >  USA300TCH1516_ALE/987627‑987785                   |                                                                                                                                             ttcttTTTCGAAGATGACATTTGATACTTTAATCTTCTAAAACCATAACTTGTCGCATCAAAAATGCCTTCTTGTACAAGTAAAATCAAAAATATGCTAATAAAAATAATTAATGAAACATAAAACAATATATTTAAatat                    >  1:30245/1‑141 (MQ=255)                   aTTTGATACTTTAATCTTCTAAAACCATAACTTGTCGCATCAAAAATGCCTTCTTGTACAAGTAAAATCAAAAATATGCTAATAAAAATAATTAATGAAACATAAAACAATATATTTAAATATGTAATGATAGTATGGCTa  >  2:31561/1‑141 (MQ=255)                   aTTTGATACTTTAATCTTCTAAAACCATAACTTGTCGCATCAAAAATGCCTTCTTGTACAAGTAAAATCAAAAATATGCTAATAAAAATAATTAATGAAACATAAAACAATATATTTAAATATGTAATGATAGTATGGCTa  >  2:31576/1‑141 (MQ=255)                   |                                                                                                                                             TTCTTTTTCGAAGATGACATTTGATACTTTAATCTTCTAAAACCATAACTTGTCGCATCAAAAATGCCTTCTTGTACAAGTAAAATCAAAAATATGCTAATAAAAATAATTAATGAAACATAAAACAATATATTTAAATATGTAATGATAGTATGGCTA  >  USA300TCH1516_ALE/987627‑987785

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑