Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1033291	1033421	131	2 [1]	[1] 2	comK	Competence transcription factor

CCATAAAATTTGCAAGAGCGTTCAATGATTTTCTGGACTTTAAAAGGATTTTGAATACGCGTTTTGTCAAACCGAATTATTTCACTACCGTTTCTTTGATCGTCATCATCAAATGCTGGTCGAATAACCATGTCTCCTTTGCGTATCAC  >  USA300TCH1516_ALE/1033414‑1033562         |                                                                                                                                             ccATAAAATTTGCAAGAGCGTTCAATGATTTTCTGGACTTTAAAAGGATTTTGAATACGCGTTTTGTCAAACCGAATTATTTCACTACTGGTTCTTTGATCGTCATCATCAAATGCTGGTCGAATAACCATGTCTCCTTTg          >  1:12984/1‑141 (MQ=255)         tttGGAAGAGCGGTCCATGATTTTCTGGACTTTAAAAGGATATTGAATACGCGTTTTGTCAAACCGGATTATGTCACTCCTGTTTCTTTGATCGTAATCATCAAATGCTGGTCGAATCACCATGTCTCCTATGCGTCTcac  >  2:56612/1‑141 (MQ=255)         |                                                                                                                                             CCATAAAATTTGCAAGAGCGTTCAATGATTTTCTGGACTTTAAAAGGATTTTGAATACGCGTTTTGTCAAACCGAATTATTTCACTACCGTTTCTTTGATCGTCATCATCAAATGCTGGTCGAATAACCATGTCTCCTTTGCGTATCAC  >  USA300TCH1516_ALE/1033414‑1033562

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑