Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1046934	1047034	101	2 [1]	[1] 2	[pchA]	[pchA]

AGGACGATATTGTCAAAGAGATATATGGCAGCTCAAAGGAATGGGTTTCAGTTGAAGTGAAATTATCACAGTCACTAGACCCGAGCACATTATTTCATCTCACTGACAATGAGGCAGGAGATCGCTTTTATATGCGTTTGAATGATAATCGAACGTCATATT  >  USA300TCH1516_ALE/1047014‑1047175                      |                                                                                                                                             agGACGATATTGTCAAAGAGATATATGGCAGCTCAAAGGAATGGGTTTCAGTTTAAGTGAAATTATCACAGTCACTAGACCCGAGCACATTATTTCATCTCACTGACAATGAGGCAGGAGATCGCTTTTATATGCGTTTGa                       >  2:7536/1‑141 (MQ=255)                      tatatGGCAGCTCAAAGGAATGGGTTTCAGTTGAAGTGAAATTATCACAGTCACTAGACCCGAGCACATTATTTCATCTCACTGACAATGAGGCAGGAGATCGCTTTTATATGCGTTTGAATGATAATCGAACGTCATAtt  <  1:8608/141‑1 (MQ=255)                      |                                                                                                                                             AGGACGATATTGTCAAAGAGATATATGGCAGCTCAAAGGAATGGGTTTCAGTTGAAGTGAAATTATCACAGTCACTAGACCCGAGCACATTATTTCATCTCACTGACAATGAGGCAGGAGATCGCTTTTATATGCGTTTGAATGATAATCGAACGTCATATT  >  USA300TCH1516_ALE/1047014‑1047175

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑