Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1056027	1056093	67	2 [1]	[0] 2	patA_2	Putative N‑acetyl‑LL‑diaminopimelate aminotransferase

AATCATCCAAATTATTCATACGATTTGAAAATTGGCGAATACTTGGTGCTCTTAAATATTTAGAATTAGAATTTAAAGAAAGTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATA  >  USA300TCH1516_ALE/1056094‑1056234 |                                                                                                                                             aaTCATCCAAATTATTCATACGATTTGAAAATTGGCGAATACTTGGTGCTCTTAAATATTTAGAATTAGAATTTAAAGAAAGTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATtaata  <  1:20711/141‑1 (MQ=255) aaTCATCCAAATTATTCATACGATTTGAAAATTGGCGAATACTTGGTGCTCTTAAATATTTAGAATTAGAATTTAAAGAAAGTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATtaata  >  1:56209/1‑141 (MQ=255) |                                                                                                                                             AATCATCCAAATTATTCATACGATTTGAAAATTGGCGAATACTTGGTGCTCTTAAATATTTAGAATTAGAATTTAAAGAAAGTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATA  >  USA300TCH1516_ALE/1056094‑1056234

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑