Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1057947	1058000	54	2 [1]	[1] 2	[slyA_2]	[slyA_2]

ACATAATTTAGTGTCGTTGTGCACACAACAAAAATTGAATCATGAATTACAAGCAAAAGTAGCGGTGATTGTTAAAATTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGA  >  USA300TCH1516_ALE/1057976‑1058141                          |                                                                                                                                             acaTAATTTAGTGTCGTTGTGCACACAACAAAAATTGAATCATGAATTACAAGCAAAAGTAGCGGTGATTGTTAAAATTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATc                           <  1:53974/141‑1 (MQ=255)                          caacaaAAATTGAATCATTAAGTACAAGCAAAAGTAGCAGTGATTGTTAAAATTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATgg  <  2:35626/141‑2 (MQ=255)                          |                                                                                                                                             ACATAATTTAGTGTCGTTGTGCACACAACAAAAATTGAATCATGAATTACAAGCAAAAGTAGCGGTGATTGTTAAAATTGATGGTAAACAATCACCGCTATTTTTGCTTGTGTATGTATAAAAAAGGGATCAAAGGTCATCCCCCATGATTGATAGTGGGGGATGA  >  USA300TCH1516_ALE/1057976‑1058141

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑