Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1108301	1108355	55	2 [1]	[1] 2	puuR	HTH‑type transcriptional regulator PuuR

ACTTAATTTAGGCAAAGAGATATATCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAACGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGCTTCATATTTATAGGGGGG  >  USA300TCH1516_ALE/1108353‑1108496    |                                                                                                                                             acTTAATTTAGGCAAAGAGATATATCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAACGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGCTTCATATTTATAggg     >  1:12212/1‑141 (MQ=255)    tAATTTAGGCAAAGAGATATATCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAACGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGCTTCATATTTATAgggggg  <  1:36319/141‑1 (MQ=255)    |                                                                                                                                             ACTTAATTTAGGCAAAGAGATATATCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAACGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGCTTCATATTTATAGGGGGG  >  USA300TCH1516_ALE/1108353‑1108496

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑