Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1124759	1124811	53	2 [1]	[1] 2	cfiB_1	2‑oxoglutarate carboxylase small subunit

TGTCTTTAGAATTTTCGATTCATTAAACTGGGTAGATCAAATGAAAGTTGCCAATGAAGCAGTACAAGAAGCGGGCAAAATCTCAGAAGGTACTATTTGTTATACAGGTGACATTTTAAATCCTGAGCGATCAAACATTTATACTT  >  USA300TCH1516_ALE/1124807‑1124952      |                                                                                                                                             tGTCTTTAGAATTTTCGATTCATTAAACTGGGTAGATCAAATGAAAGTTGCCAATGAAGCAGTACAAGAAGCGGGCAAAATCTCAGAAGGTACTATTTGTTATACAGGTGACATTTTAAATCCTGAGCGATCAAACATTta       >  2:35769/1‑141 (MQ=255)      ttAGAATTTTCGATTCATTAAACTGGGTAGATCAAATGAAAGTTGCCAATGAAGCAGTACAAGAAGCGGGCAAAATCTCAGAAGGTACTATTTGTTATACAGGTGACATTTTAAATCCTGAGCGATCAAACATTTATACtt  <  1:38062/141‑1 (MQ=255)      |                                                                                                                                             TGTCTTTAGAATTTTCGATTCATTAAACTGGGTAGATCAAATGAAAGTTGCCAATGAAGCAGTACAAGAAGCGGGCAAAATCTCAGAAGGTACTATTTGTTATACAGGTGACATTTTAAATCCTGAGCGATCAAACATTTATACTT  >  USA300TCH1516_ALE/1124807‑1124952

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑