Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1133588	1133758	171	2 [1]	[1] 2	coaD	Phosphopantetheine adenylyltransferase

AATTTAGTGGTTTACTAGTCGATTATTGTGAACAAGTAGGAGCTAAAACAATCATACGTGGTTTAAGAGCAGTCAGTGATTTTGAATATGAATTACGCTTAACTTCAATGAATAAAAAGTTGAACAATGAAATTGAAACGTTATATATGATGTCTAGTACTAATTATT  >  USA300TCH1516_ALE/1133732‑1133899                            |                                                                                                                                             aaTTTAGTGGTTTACTAGTCGATTATTGTGAACAAGTAGGAGCTAAAACAATCATACGTGGTTTAAGAGCAGTCAGTGATTTTGAATATGAATTACGCTTAACTTCAATGAATAAAAAGTTGAACAATGAAATTGAAACGt                             >  1:37541/1‑141 (MQ=255)                            gtgAACAAGTAGGAGCTAAAACAATCATACGTGGTTTAAGAGCAGTCAGTGATTTTGAATATGAATTACGCTTAACTTCAATGAATAAAAAGTTGAACAATGAAATTGAAACGTTATCTATGATGTCTAGAACTAtttctt  >  2:2351/1‑141 (MQ=255)                            |                                                                                                                                             AATTTAGTGGTTTACTAGTCGATTATTGTGAACAAGTAGGAGCTAAAACAATCATACGTGGTTTAAGAGCAGTCAGTGATTTTGAATATGAATTACGCTTAACTTCAATGAATAAAAAGTTGAACAATGAAATTGAAACGTTATATATGATGTCTAGTACTAATTATT  >  USA300TCH1516_ALE/1133732‑1133899

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑