Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1137454	1137524	71	2 [0]	[1] 2	isdB	Iron‑regulated surface determinant protein B

GTTGAACTAACAATTTTAACAGCTTTTGTTCCGTTTGATACAGAGAAGCGAATGTAAGCATAATCTTTAACAGTATCGTATGATACTAATTTAATTGGCAACTTTTTGTCACCTTCATAAACTTCAAATTTTCTCCAAAATTGACCTGA  >  USA300TCH1516_ALE/1137517‑1137665         |                                                                                                                                             gtTGAACTAACAATTTTAACAGCTTTTGTTCCGTTTGATACAGAGAAGCGAATGTAAGCATAATCTTTAACAGTATCGTATGATACTAATTTAATTGGCAACTTTTTGTCACCTTCATAAACTTCAAATTTTCTCCAAAAt          >  1:26180/1‑141 (MQ=255)         aaCAATTTTAACAGCTTTTGTTCCGTTTGATACAGAGAAGCGAATGTAAGCATAATCTTTAACAGTATCGTATGATACTAATTTAATTGGCAACTTTTTGTCACCTTCATAAACTTCAAATTTTCTCCAAAATTGACCTGa  >  1:21918/1‑141 (MQ=255)         |                                                                                                                                             GTTGAACTAACAATTTTAACAGCTTTTGTTCCGTTTGATACAGAGAAGCGAATGTAAGCATAATCTTTAACAGTATCGTATGATACTAATTTAATTGGCAACTTTTTGTCACCTTCATAAACTTCAAATTTTCTCCAAAATTGACCTGA  >  USA300TCH1516_ALE/1137517‑1137665

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑