Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1179814	1179972	159	2 [1]	[1] 2	USA300HOU_RS05875/USA300HOU_RS05880	hypothetical protein/hypothetical protein

TCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATC  >  USA300TCH1516_ALE/1179949‑1180113                         |                                                                                                                                             tCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCt                          >  2:64375/1‑141 (MQ=255)                         atatACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATc  <  1:64375/141‑1 (MQ=255)                         |                                                                                                                                             TCATATTAAATCAAAGAGGCATTGATATACACTAAAAAGAGGCAAGATTACCTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATC  >  USA300TCH1516_ALE/1179949‑1180113

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑