Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ USA300TCH1516_ALE 1259978 1260189 212 2 [1] [1] 2 rnhB Ribonuclease HII

GTATGTTGAAATGACTTACTTTGAAAATGAAATATTAAAAGAGCATCCTAATGCTATTATTTGTGGGATTGATGAAGTTGGAAGAGGACCTTTAGCAGGTCCAGTCGTTGCATGCGCAACAATTTTAAATTCAAATCACAATTATTTGGGCCTTGATGACTCGAAAAAAGTACCTGTTACGAAACGTCTAGAATTAAATGAAGCACTAAAAAATGAAGTTACTGCTTTTGCATATGGGATCGCGACAGCTGAAGAAATAGATGAATT  >  USA300TCH1516_ALE/1260064‑1260330
                                                                                                                              |                                                                                                                                            
gTATGTTGAAATGACTTACTTTGAAAATGAAATATTAAAAGAGCATCCTAATGCTATTATTTGTGGGATTGATGAAGTTGGAAGAGGACCTTTAGCAGGTCCAGTCGTTGCATGCGCAACAATTTTAAATTCAAATCACaa                                                                                                                                >  1:23885/1‑141 (MQ=255)
                                                                                                                              aaaTTCAAATCACAATTATTTGGGCCTTGATGACTCGAAAAAAGTACCTGTTACGAAACGTCTAGAATTAAATGAAGCACTAAAAAATGAAGTTACTGCTTTTGCATATGGGATCGCGACAGCTGAAGAAATAGATGAAtt  >  2:34573/1‑141 (MQ=255)
                                                                                                                              |                                                                                                                                            
GTATGTTGAAATGACTTACTTTGAAAATGAAATATTAAAAGAGCATCCTAATGCTATTATTTGTGGGATTGATGAAGTTGGAAGAGGACCTTTAGCAGGTCCAGTCGTTGCATGCGCAACAATTTTAAATTCAAATCACAATTATTTGGGCCTTGATGACTCGAAAAAAGTACCTGTTACGAAACGTCTAGAATTAAATGAAGCACTAAAAAATGAAGTTACTGCTTTTGCATATGGGATCGCGACAGCTGAAGAAATAGATGAATT  >  USA300TCH1516_ALE/1260064‑1260330

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: