Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1263588	1263650	63	2 [1]	[1] 2	lytN_1	putative cell wall hydrolase LytN

AAACTACAGTTTCAAATATTCAAAATACAAATAATATAGCAAATCCTAATTTAATATTTATTGGTCAAAAATTAAAAGTGCCAATGACACCATTAGTAGAACCAAAACCAAAAACAGTGTCTTCAAATAATAAAAGTAATAGTAAT  >  USA300TCH1516_ALE/1263646‑1263791      |                                                                                                                                             acaatACAGTTTCAAATATTCAAAATACAAATAATATAGCAAATCCTAATTTAATATTTATTGGTCAAAAATTAAAAGTGCCAATGACACCATTAGTAGAACCAAAACCAAAAACAGTGTCTTCAAATAATAAAagtaata       <  1:24140/137‑1 (MQ=255)      aCAGTTTCAAATATTCAAAATACAAATAATATAGCAAATCCTAATTTAATATTTATTGGTCAAAAATTAAAAGTGCCAATGACACCATTAGTAGAACCAAAACCAAAAACAGTGTCTTCAAATAATAAAagtaatagtaat  >  1:26374/1‑141 (MQ=255)      |                                                                                                                                             AAACTACAGTTTCAAATATTCAAAATACAAATAATATAGCAAATCCTAATTTAATATTTATTGGTCAAAAATTAAAAGTGCCAATGACACCATTAGTAGAACCAAAACCAAAAACAGTGTCTTCAAATAATAAAAGTAATAGTAAT  >  USA300TCH1516_ALE/1263646‑1263791

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑