Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1274365	1274545	181	2 [1]	[1] 2	[codY]	[codY]

ACTTTGATGATTATGTTGAAGTCATTTCTTTATTTTTGTCTAATTTTCAATCAAATTGATATTTCACATTAACTTGATAGAATTACCTTTAAATTTATGGAAAAATGCTTGAAAAACATTTGCTTTAGACACGGCATTATGTTATATTTATTTTCGGCTATAAAGCCAATACACACATATCAAACGTGATTGTGTAAAGGGTGCAATATTTATATATTGTCTTTACAATAGTTTGCTATGGAGG  >  USA300TCH1516_ALE/1274443‑1274686                                                                                                        |                                                                                                                                             aCTTTGATGATTATGTTGAAGTCATTTCTTTATTTTTGTCTAATTTTCAATCAAATTGATATTTCACATTAACTTGATAGAATTACCTTTAAATTTATGGAAAAATGCTTGAAAAACATTTGCTTTAGACACGGCATTATg                                                                                                         >  1:59272/1‑141 (MQ=255)                                                                                                        aaTGCTTGAAAAACATTTGCTTTAGACACGGCATTATGTTATATTTATTTTCGGCTATAAAGCCAATACACACATATCAAACGTGATTGTGTAAAGGGTGCAATATTTATATATTGTCTTTACAATAGTTTGCTATGGAgg  >  2:55880/1‑141 (MQ=255)                                                                                                        |                                                                                                                                             ACTTTGATGATTATGTTGAAGTCATTTCTTTATTTTTGTCTAATTTTCAATCAAATTGATATTTCACATTAACTTGATAGAATTACCTTTAAATTTATGGAAAAATGCTTGAAAAACATTTGCTTTAGACACGGCATTATGTTATATTTATTTTCGGCTATAAAGCCAATACACACATATCAAACGTGATTGTGTAAAGGGTGCAATATTTATATATTGTCTTTACAATAGTTTGCTATGGAGG  >  USA300TCH1516_ALE/1274443‑1274686

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑