Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1290797	1290851	55	2 [1]	[1] 2	infB	Translation initiation factor IF‑2

TTAATTGCCGATGATTATGGCGTTGAGGTTGAAGAAGAAGTTGTGATTAATGAAGAAGACTTATCAATCTATTTCGAAGACGAAAAAGATGATCCAGAGGCAATTGAGAGACCAGCAGTTGTAACAATTATGGGACATGTTGACCATGGTA  >  USA300TCH1516_ALE/1290842‑1290992           |                                                                                                                                             ttaattGCCGATGATTATGGCGTTGAGGTTGAAGAAGAAGTTGTGATTAATGAAGAAGACTTATCAATCTATTTCGAAGACGAAAAAGATGATCCAGAGGCAATTGAGAGACCAGCAGTTGTAACAATTATGGGACATGtt            <  2:54455/141‑1 (MQ=255)           atgatTATGGCGTTGAGGTTGAAGAAGAAGTTGTGATTAATGAAGAAGACTTATCAATCTATTTCGAAGACGAAAAAGATGATCCAGAGGCAATTGAGAGACCAGCAGTTGTAACAATTATGGGACATGTTGACCATGGTa  >  2:25564/1‑141 (MQ=255)           |                                                                                                                                             TTAATTGCCGATGATTATGGCGTTGAGGTTGAAGAAGAAGTTGTGATTAATGAAGAAGACTTATCAATCTATTTCGAAGACGAAAAAGATGATCCAGAGGCAATTGAGAGACCAGCAGTTGTAACAATTATGGGACATGTTGACCATGGTA  >  USA300TCH1516_ALE/1290842‑1290992

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑