Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1303316	1303327	12	2 [1]	[1] 2	phnF	putative transcriptional regulator PhnF

AGTTCAATTTAAAATCACTAGAAAAATATAGATGTAAGAAGATATAGAGGAGGCTATATATTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAAT  >  USA300TCH1516_ALE/1303326‑1303468   |                                                                                                                                             aGTTCAATTTAAAATCACTAGAAAAATATAGATGTAAGAAGATATAGAGGAGGCTATATATTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTaa    >  1:53297/1‑141 (MQ=255)   ttCAATTTAAAATCACTAGAAAAATATAGATGTAAGAAGATATAGAGGAGGCTATATATTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAAt  <  1:31617/141‑1 (MQ=255)   |                                                                                                                                             AGTTCAATTTAAAATCACTAGAAAAATATAGATGTAAGAAGATATAGAGGAGGCTATATATTTGAGTAGACAATCTCAACCAAATATACATATCAAAGTTTCACCAACAACTAAATTTAAAACAACTACTATAGTTTTTAAAT  >  USA300TCH1516_ALE/1303326‑1303468

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑