Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1311666	1311683	18	2 [0]	[1] 3	rny_1	Ribonuclease Y

AGCTGACAATATCAAAAAAGAGAAATTACTTGAGGCAAAAGAAGAAAACCAAATCCTAAGAGAACAAACTGAAGCAGAACTACGAGAAAGACGTAGCGAACTTCAAAGACAAGAAACCCGACTTCTTCAAAAAGAAGAAAAC  >  USA300TCH1516_ALE/1311683‑1311824  |                                                                                                                                             agCTGACAATATCAAAAAAGAGAAATTACTTGAGGCAAAAGAAGAAAACCAAATCCTAAGAGAACAAACTGAAGCAGAACTACGAGAAAGACGTAGCGAACTTCAAAGACAAGAAACCCGACTTCTTCAAAAAGAAGaaaa   >  2:38187/1‑141 (MQ=255)  gCTGACAATATCAAAAAAGAGAAATTACTTGAGGCAAAAGAAGAAAACCAAATCCTAAGAGAACAAACTGAAGCAGAACTACGAGAAAGACGTAGCGAACTTCAAAGACAAGAAACCCGACTTCTTCAAAAAGAAGAAAAc  <  2:44153/141‑1 (MQ=255)  gCTGACAATATCAAAAAAGAGAAATTACTTGAGGCAAAAGAAGAAAACCAAATCCTAAGAGAACAAACTGAAGCAGAACTACGAGAAAGACGTAGCGAACTTCAAAGACAAGAAACCCAACTAATTCAAAAAGAAGAAAAc  <  2:15320/141‑1 (MQ=255)  |                                                                                                                                             AGCTGACAATATCAAAAAAGAGAAATTACTTGAGGCAAAAGAAGAAAACCAAATCCTAAGAGAACAAACTGAAGCAGAACTACGAGAAAGACGTAGCGAACTTCAAAGACAAGAAACCCGACTTCTTCAAAAAGAAGAAAAC  >  USA300TCH1516_ALE/1311683‑1311824

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑