Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1328755	1328853	99	2 [1]	[1] 2	[glpD]	[glpD]

AGGATTGTTTATGTGGGACAAGTCTCTCGTTTTTACATTTTTTAGGAGGCGTTTTGGAATGGCATTGTCTACTTTTAAGAGAGAACATATTAAAAAGAATTTAAGAAATGATGAATATGATTTAGTAATTATTGGTGGCGGTATTACAGGTGCAGGTATTGCACTAGACGCGAGTGAAAGAGGAATGAAAGTTGCATTAGT  >  USA300TCH1516_ALE/1328794‑1328994                                                             |                                                                                                                                             aGGATTGTTTATGTGGGACAAGTCTCTCGTTTTTACATTTTTTAGGAGGCGTTTTGGAATGGCATTGTCTACTTTTAAGAGAGAACATATTAAAAAGAATTTAAGAAATGATGAATATGATTTAGTAATTATTGGTGGCgg                                                              <  2:3544/141‑1 (MQ=255)                                                             ggCATTGTCTACTTTTAAGAGAGAACATATTAAAAAGAATTTAAGAAATGATGAATATGATTTAGTAATTATTGGTGGCGGTATTACAGGTGCAGGTATTGCACTAGACGCGAGTGAAAGAGTAATGAAAGTTGCATTAGt  <  2:29999/141‑1 (MQ=255)                                                             |                                                                                                                                             AGGATTGTTTATGTGGGACAAGTCTCTCGTTTTTACATTTTTTAGGAGGCGTTTTGGAATGGCATTGTCTACTTTTAAGAGAGAACATATTAAAAAGAATTTAAGAAATGATGAATATGATTTAGTAATTATTGGTGGCGGTATTACAGGTGCAGGTATTGCACTAGACGCGAGTGAAAGAGGAATGAAAGTTGCATTAGT  >  USA300TCH1516_ALE/1328794‑1328994

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑