Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1336196	1336326	131	2 [1]	[1] 2	mgl/glnR	L‑methionine gamma‑lyase/HTH‑type transcriptional regulator GlnR

AACAAGTTCAAAAGTAGAGGAGAGGAACAATGATATCGAATGATGCAATCAGACGAAATATGGCTGTCTTCTCTATGAGTGTAGTAAGTAAGTTAACGGATTTAACGCCAAGGCAAATACGTTACTATGAAACACATGAACTCATCAAACCTGAAAGAA  >  USA300TCH1516_ALE/1336309‑1336467                   |                                                                                                                                             aaCAAGTTCAAAAGTAGAGGAGAGGAACAATGATATCGAATGATGCAATCAGACGAAATATGGCTGTCTTCTCTATGAGTGTAGTAAGTAAGTTAACGGATTTAACGCCAAGGCAAATACGTTACTATGAAACACATGAAc                    >  2:4369/1‑141 (MQ=255)                   ggagaggaACAATGATATCGAATGATGCAATCAGACGAAATATGGCTGTCTTCTCTATGAGTGTAGTAAGTAAGTTAACGGATTTAACGCCAAGGCAAATACGTTACTATGAAACACATGAACTCATCAAACCTGAAAGaa  >  1:35961/1‑141 (MQ=255)                   |                                                                                                                                             AACAAGTTCAAAAGTAGAGGAGAGGAACAATGATATCGAATGATGCAATCAGACGAAATATGGCTGTCTTCTCTATGAGTGTAGTAAGTAAGTTAACGGATTTAACGCCAAGGCAAATACGTTACTATGAAACACATGAACTCATCAAACCTGAAAGAA  >  USA300TCH1516_ALE/1336309‑1336467

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑