Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1343202	1343281	80	2 [1]	[1] 2	[USA300HOU_RS06635]	[USA300HOU_RS06635]

GCACATAAACTTACAGAAATAAAATATAATTATAGTATTTTAATTAATTAGAGGTGGAAATGATTGCTAATATTAAAAATAAAAGAAATTAATGATAAAAGTGTTACATATAAATATTTTCCTAATAATGATGAAAATATTAAGCCT  >  USA300TCH1516_ALE/1343276‑1343422       |                                                                                                                                             gCACATAAACTTACAGAAATAAAATATAATTATAGTATTTTAATTAATTAGAGGTGGAAATGATTGCTAATATTAAAAATAAAAGAAATTAATGATAAAAGTGTTACATATAAATATTTTCCTAATAATGATGAAAATAtt        <  2:10561/141‑1 (MQ=255)       aaaCTTACAGAAATAAAATATAATTATAGTATTTTAATTAATTAGAGGTGGAAATGATTGCTAATATTAAAAATAAAAGAAATTAATGATAAAAGTGTTACATATAAATATTTTCCTAATAATGATGAAAATATTAAGCCt  >  2:34948/1‑141 (MQ=255)       |                                                                                                                                             GCACATAAACTTACAGAAATAAAATATAATTATAGTATTTTAATTAATTAGAGGTGGAAATGATTGCTAATATTAAAAATAAAAGAAATTAATGATAAAAGTGTTACATATAAATATTTTCCTAATAATGATGAAAATATTAAGCCT  >  USA300TCH1516_ALE/1343276‑1343422

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑