Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1344148	1344211	64	2 [1]	[1] 2	USA300HOU_RS06660	hypothetical protein

TAACTGCAAAAGAATTGAGTGAATCTTTTAAAGAATTAGTTGAAGAATTTGAAAGTATAGAAAAAGCGAAAAAGAATTCAAATTCAAAAGATAAATAGCATCCTTTTTAGACAGATAAAGAGAAAGTGGTGCTATTTTTA‑TACGCTTTTTTAACTATTTACTGAAAATGCAGAAGCACAAAAGTTA  >  USA300TCH1516_ALE/1344167‑1344352                                              |                                                                                                                                              tAACTGCAAAAGAATTGAGTGAATCTTTTAAAGAATTAGTTGAAGAATTTGAAAGTATAGAAAAAGCGAAAAAGAATTCAAATTCAAAAGATAAATAGCATCCTTTTTAGACAGATAAAGAGAAAGTGGTGCTATTTTta‑t                                               <  1:32739/141‑1 (MQ=255)                                              aaTTTGAAAGTATAGAAAAAGCGAAAAAGAATTCAAATTCAAAAGATAACTAGCATCCTATTTAGACCGATAAAGTGCCAGAGGTG‑GATTACGAGTTCTTTTGTGAAAATATTTACTGAGAATGCAGAAGCACAAAAGTTa  >  1:25746/1‑141 (MQ=255)                                              |                                                                                                                                              TAACTGCAAAAGAATTGAGTGAATCTTTTAAAGAATTAGTTGAAGAATTTGAAAGTATAGAAAAAGCGAAAAAGAATTCAAATTCAAAAGATAAATAGCATCCTTTTTAGACAGATAAAGAGAAAGTGGTGCTATTTTTA‑TACGCTTTTTTAACTATTTACTGAAAATGCAGAAGCACAAAAGTTA  >  USA300TCH1516_ALE/1344167‑1344352

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑