Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1366556	1366697	142	2 [1]	[1] 2	[guaC]	[guaC]

ATTTGGTCCGAAAAAATTCAAGCTACCTGTAGTTCCTGCAAATATGCAAACAGTTATGAATGAGAAATTAGCGAAATGGTTTGCTGAAAATGATTACTTTTATATCATGCATCGTTTTGATGAAGAAGCAAGAATACCTTTTATAAAACATATGCAAAATTCAGGCTTATTT  >  USA300TCH1516_ALE/1366667‑1366838                                |                                                                                                                                             aTTTGGTCCGAAAAAATTCAAGCTACCTGTAGTTCCTGCAAATATGCAAACAGTTATGAATGAGAAATTAGCGAAATGGTTTGCTGAAAATGATTACTTTTATATCATGCATCGTTTTGATGAAGAAGCAAGAATACCttt                                 >  1:18506/1‑141 (MQ=255)                                gTTCCTGCAAATATGCAAACAGTTATGAATGAGAAATTAGCGAAATGGTTTGCTGAAAACGATTACTTTTATATCATGCATCGTTTTGATGAAGAAGCAAGAATACCTTTTATAAAACATATGCAAAATTCAGGCTTAttt  >  2:41168/1‑141 (MQ=255)                                |                                                                                                                                             ATTTGGTCCGAAAAAATTCAAGCTACCTGTAGTTCCTGCAAATATGCAAACAGTTATGAATGAGAAATTAGCGAAATGGTTTGCTGAAAATGATTACTTTTATATCATGCATCGTTTTGATGAAGAAGCAAGAATACCTTTTATAAAACATATGCAAAATTCAGGCTTATTT  >  USA300TCH1516_ALE/1366667‑1366838

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑