Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1369429	1369449	21	2 [1]	[1] 2	lexA_1	LexA repressor

CCTTTTTCTTCAAGACGTGAAAGGTGACCATGAACAGTTGAACTGGATGCTAAGCCAACTGCTTCACCAATTTCGCGAACACTAGGCGGATAACCTTTCGTTTGAACAACTTGTTTAATATAGTTATATATTTCGCTTTGTCGTTTTGTTAA  >  USA300TCH1516_ALE/1369439‑1369590            |                                                                                                                                             ccTTTTTCTTCAAGACGTGAAAGGTGACCATGAACAGTTGAACTGGATGCTAAGCCAACTGCTTCACCAATTTCGCGAACACTAGGCGGATAACCTTTCGTTTGAACAACTTGTTTAATATAGTTATATATTTCGCTTTGt             <  1:52632/141‑1 (MQ=255)            aaGACGTGAAAGGTGACCATGAACAGTTGAACTGGATGCTAAGCCAACTGCTTCACCAATTTCGCGAACACTAGGCGGATAACCTTTCGTTTGAACAACTTGTTTAATATAGTTATATATTTCGCTTTGTCGTTTTGTTaa  >  1:46616/1‑141 (MQ=255)            |                                                                                                                                             CCTTTTTCTTCAAGACGTGAAAGGTGACCATGAACAGTTGAACTGGATGCTAAGCCAACTGCTTCACCAATTTCGCGAACACTAGGCGGATAACCTTTCGTTTGAACAACTTGTTTAATATAGTTATATATTTCGCTTTGTCGTTTTGTTAA  >  USA300TCH1516_ALE/1369439‑1369590

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑