Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1380772	1381350	579	2 [1]	[1] 2	[acnA]	[acnA]

CCATTTAAACCTTCTCGTGTTATTTTACAAGATTTCACAGGTGTACCAGCCGTAGTTGATTTAGCTTCTTTACGTAAAGCAATGGATGACGTTGGGGGAGATATTACTAAAATTAATCCAGAAGTACCGGTGGATTTAGTTATTGACCACTCAGTTCAAGTGGATAGCTATGCAAAT  >  USA300TCH1516_ALE/1381315‑1381491                                     |                                                                                                                                             ccATTTAAACCTTCTCGTGTTATTTTACAAGATTTCACAGGTGTACCAGCCGTAGTTGATTTAGCTTCTTTACGTAAAGCAATGGATGACGTTGGGGGAGATATTACTAAAATTAATCCAGAAGTACCGGTGGATTTAGtt                                      >  1:3284/1‑141 (MQ=255)                                     acaGGTGTACCAGCCGTAGTTGATTTAGCTTCTTTACGTAAAGCAATGGATGACGTTGGGGGAGATATTACTAAAATTAATCCAGAAGTACCGGTGGATTTAGTTATTGACCACTCAGTTCAAGTGGATAGCTATGCAAAt  >  1:42219/1‑141 (MQ=255)                                     |                                                                                                                                             CCATTTAAACCTTCTCGTGTTATTTTACAAGATTTCACAGGTGTACCAGCCGTAGTTGATTTAGCTTCTTTACGTAAAGCAATGGATGACGTTGGGGGAGATATTACTAAAATTAATCCAGAAGTACCGGTGGATTTAGTTATTGACCACTCAGTTCAAGTGGATAGCTATGCAAAT  >  USA300TCH1516_ALE/1381315‑1381491

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑