Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1419276	1419342	67	2 [1]	[1] 2	USA300HOU_RS07040	hypothetical protein

ATAATAGAAAACTAATTAATAAACTCATAATCGCTAAAAATGCAGCGTATCCTAATAATGGTTGATATTTTATATCTTGAAAATTTGGAATAAAAAATGCAAGCACACCTAATATAACAAATGTAATTACTGCAGATACAAACCATTTATTTAAAACTAAGCAACAGAATATT  >  USA300TCH1516_ALE/1419311‑1419483                                 |                                                                                                                                             ataataGAAAACTAATTAATAAACTCATAATCGCTAAAAATGCAGCGTATCCTAATAATGGTTGATATTTTATATCTTGAAAATTTGGAATAAAAAATGCAAGCACACCTAATATAACAAATGTAATTACTGCAGATACaa                                  >  1:40292/1‑141 (MQ=255)                                 gCTAAAAATGCAGCGTATCCTAATAATGGTTTATATTTTATATCTTGAAAAAATGGAATAAAAAATGCAAGCACACCTAATATATCAAATGTAATTACTGCAGATACAAACCATTTATTTAAAACTAAGCAACAGAATAtt  <  2:58128/141‑1 (MQ=255)                                 |                                                                                                                                             ATAATAGAAAACTAATTAATAAACTCATAATCGCTAAAAATGCAGCGTATCCTAATAATGGTTGATATTTTATATCTTGAAAATTTGGAATAAAAAATGCAAGCACACCTAATATAACAAATGTAATTACTGCAGATACAAACCATTTATTTAAAACTAAGCAACAGAATATT  >  USA300TCH1516_ALE/1419311‑1419483

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑