Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1463901	1463957	57	2 [1]	[1] 2	USA300HOU_RS07285	DegV domain‑containing protein

TCAACATATTCAATGACGTTAGCATGTGCGACACCAATGGATTTGATTTCATGATCTCCTATAAATTCAGCAATTTCCTTTTTCAAGTATTGGATACTAGAATTTTGAGTTCTCGCATTGTGCACAAGCTCTAAGCGACCATCATCTAGTGT  >  USA300TCH1516_ALE/1463947‑1464098            |                                                                                                                                             tCAACATATTCAATGACGTTAGCATGTGCGACACCAATGGATTTGATTTCATGATCTCCTATAAATTCAGCAATTTCCTTTTTCAAGTATTGGATACTAGAATTTTGAGTTCTCGCATTGTGCACAAGCTCTAAGCGACca             >  1:6251/1‑141 (MQ=255)            aaTGACGTTAGCATGTGCGACACCAATGGATTTGATTTCATGATCTCCTATAAATTCAGCAATTTCCTTTTTCAAGTATTGGATACTAGAATTTTGAGTTCTCGCATTGTGCACAAGCTCTAAGCGACCATCATCTAgtgt  <  1:47889/141‑1 (MQ=255)            |                                                                                                                                             TCAACATATTCAATGACGTTAGCATGTGCGACACCAATGGATTTGATTTCATGATCTCCTATAAATTCAGCAATTTCCTTTTTCAAGTATTGGATACTAGAATTTTGAGTTCTCGCATTGTGCACAAGCTCTAAGCGACCATCATCTAGTGT  >  USA300TCH1516_ALE/1463947‑1464098

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑