Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1512947	1513040	94	2 [1]	[1] 2	USA300HOU_RS07375	hypothetical protein

AATTTGTTGCAGATCAAAATGCGAAACATACGTATTCTAATGTGATGCGAAGTATACATAGTTCTTTGTTTACTGAAAATACTATTATTAATTATTTAGTAGAGTTAACCGCATGTTGGATGATATTCATGATTTTATCTGGTACTTATTTACTCATTAAGAAGC  >  USA300TCH1516_ALE/1513017‑1513181                         |                                                                                                                                             aatTTGTTGCAGATCAAAATGCGAAACATACGTATTCTAATGTGATGCGAAGTATACATAGTTCTTTGTTTACTGAAAATACTATTATTAATTATTTAGTAGAGTTAACCGCATGTTGGATGATATTCATGATTTTATCTg                          <  2:5026/141‑1 (MQ=255)                         aaCATACGTATTCTAATGTGATGCGAAGTATACATAGTTCTTTGTTTACTGAAAATACTATTATTAATTATTTAGTAGAGTTAACCGCATGTTGGATGATATTCATGATTTTATCTGGTACTTATTTACTCATTAAGAAGc  <  2:49380/141‑1 (MQ=255)                         |                                                                                                                                             AATTTGTTGCAGATCAAAATGCGAAACATACGTATTCTAATGTGATGCGAAGTATACATAGTTCTTTGTTTACTGAAAATACTATTATTAATTATTTAGTAGAGTTAACCGCATGTTGGATGATATTCATGATTTTATCTGGTACTTATTTACTCATTAAGAAGC  >  USA300TCH1516_ALE/1513017‑1513181

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑