Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1537322	1537367	46	2 [1]	[1] 2	aroB	3‑dehydroquinate synthase

GAACGCCTCGTAAAAGTGTCGCCGCAATAAACCCAGCAAAATCACCAGTTGCACCACCACCAACAGCAATAATTGCTGTATTACGAGTTACATGATGGGATAAAATATACTCTAATGTTTCTTGATATTGCTCAAATGTTTTCGTCTTTTC  >  USA300TCH1516_ALE/1537358‑1537508           |                                                                                                                                             gAACGCCTCGTAAAAGTGTCGCCGCAATAAACCCAGCAAAATCACCAGTTGCACCACCACCAACAGCAATAATTGCTGTATTACGAGTTACATGATGGGATAAAATATACTCTAATGTTTCTTGATATTGCTCAAATGttt            <  1:15985/141‑1 (MQ=255)           tAAAAGTGTCGCCGCAATAAACCCAGCAAAATCACCAGTTGCACCACCACCAACAGCAATAATTGCTGTATTACGAGTTACATGATGGGATAAAATATACTCTAATGTTTCTTGATATTGCTCAAATGTTTTCGTCTTTTc  <  2:18543/141‑1 (MQ=255)           |                                                                                                                                             GAACGCCTCGTAAAAGTGTCGCCGCAATAAACCCAGCAAAATCACCAGTTGCACCACCACCAACAGCAATAATTGCTGTATTACGAGTTACATGATGGGATAAAATATACTCTAATGTTTCTTGATATTGCTCAAATGTTTTCGTCTTTTC  >  USA300TCH1516_ALE/1537358‑1537508

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑