Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1565625	1565665	41	2 [1]	[1] 2	USA300HOU_RS07680	hypothetical protein

ATTGTAATCATTAATAGCTAATTCTGACCACTCAGACCATGAACCCGCTTCTTTTCTTTTAACAAACACTTTATTTGTACCGTTCGGTCGATAAGTCATACGCTTGTAATCTGAAGTTACTACTAAATATTCGACAGTACCGTTAGTACTA  >  USA300TCH1516_ALE/1565656‑1565806           |                                                                                                                                             aTTGTAATCATTAATAGCTAATTCTGACCACTCAGACCATGAACCCGCTTCTTTTCTTTTAACAAACACTTTATTTGTACCGTTCGGTCGATAAGTCATACGCTTGTAATCTGAAGTTACTACTAAATATTCGACAGTAcc            >  1:2590/1‑141 (MQ=255)           ttAATAGCTAATTCTGACCACTCAGACCATGAACCCGCTTCTTTTCTTTTAACAAACACTTTATTTGGACCGTGCGGTCGATAATTCATACGTTGGTAATCTGAATTTACTACTAAATATTCGACAGTACCGTTAGTACTa  >  1:12795/1‑141 (MQ=255)           |                                                                                                                                             ATTGTAATCATTAATAGCTAATTCTGACCACTCAGACCATGAACCCGCTTCTTTTCTTTTAACAAACACTTTATTTGTACCGTTCGGTCGATAAGTCATACGCTTGTAATCTGAAGTTACTACTAAATATTCGACAGTACCGTTAGTACTA  >  USA300TCH1516_ALE/1565656‑1565806

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑