Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1588686	1588755	70	3 [1]	[1] 2	[USA300HOU_RS07790]	[USA300HOU_RS07790]

TCTTGCCAAACTTTTAAAAATAGCTGTTAGAGGGTTACCCCTATACCTCTTTACTCCCTAACACTACTTTTTAAACTTTATAGTGAATTTGATGCAACATTGGAAACAAACAGGGTTGAACCTTACAGCGAGAAGGGAAAGAGGTGTTGTAT  >  USA300TCH1516_ALE/1588745‑1588896            |                                                                                                                                             tCTTGCCAAACTTTTAAAAATAGCTGTTAGAGGGTTACCCCTATACCTCTTTACTCCCTAACACTACTTTTTAAACTTTATAGTGAATTTGATGCAACATTGGAAACAAACAGGGTTGAACCTTACAGCGAGAAGGGAAag             <  2:57717/141‑1 (MQ=255)            ttttAAAAATAGCTGTTAGAGGGTTACCCCTATACCTCTTTACTCCCTAACACTACTTTTTAAACTTTATAGTGAATTTGATGCAACATTGGAAACAAACAGGGTTGAACCTTACAGCGAGAAGGGAAAGAGGTGTTGTAt  >  1:43515/1‑141 (MQ=255)            |                                                                                                                                             TCTTGCCAAACTTTTAAAAATAGCTGTTAGAGGGTTACCCCTATACCTCTTTACTCCCTAACACTACTTTTTAAACTTTATAGTGAATTTGATGCAACATTGGAAACAAACAGGGTTGAACCTTACAGCGAGAAGGGAAAGAGGTGTTGTAT  >  USA300TCH1516_ALE/1588745‑1588896

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑