Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1621367	1621378	12	2 [1]	[1] 2	zwf	Glucose‑6‑phosphate 1‑dehydrogenase

AACGCCTTGTTATCGAAAAACCATTCGGTAGTGATTTAAAATCAGCCGAAGCATTAAACAATCAAATTCGTAAATCATTTAAAGAAGAAGAAATTTATCGTATTGACCACTATTTAGGAAAAGACATGGTTCAAAATATCGAGGTATTA  >  USA300TCH1516_ALE/1621371‑1621519         |                                                                                                                                             aaCGCCTTGTTATCGAAAAACCATTCGGTAGTGATTTAAAATCAGCCGAAGCATTAAACAATCAAATTCGTAAATCATTTAAAGAAGAAGAAATTTATCGTATTGACCACTATTTAGGAAAAGACATGGTTCAAAATATCg          >  2:54304/1‑141 (MQ=255)         gTTATCGAAAAACCATTCGGTAGTGATTTAAAATCAGCCGAAGCATTAAACAATCAAATTCGTAAATCATTTAAAGAAGAAGAAATTTATCGTATTGACCACTATTTAGGAAAAGACATGGTTCAAAATATCGAGGTATTa  >  2:49344/1‑141 (MQ=255)         |                                                                                                                                             AACGCCTTGTTATCGAAAAACCATTCGGTAGTGATTTAAAATCAGCCGAAGCATTAAACAATCAAATTCGTAAATCATTTAAAGAAGAAGAAATTTATCGTATTGACCACTATTTAGGAAAAGACATGGTTCAAAATATCGAGGTATTA  >  USA300TCH1516_ALE/1621371‑1621519

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑